Signature	SharedGeneNum	SharedGenes	AvgPval	BreastC_M33 Chr20p11-13,q11-13_UniqueNum	BreastC_M33 Chr20p11-13,q11-13_pVal	BreastC_M33 Chr20p11-13,q11-13_Unique	ColonC_M17 Chr19 Chr11q Chr16_UniqueNum	ColonC_M17 Chr19 Chr11q Chr16_pVal	ColonC_M17 Chr19 Chr11q Chr16_Unique
AGUIRRE_PANCREATIC_CANCER_COPY_NUMBER_UP	0		5.03104038266e-05	11	9.38067333499e-05	GID8|OSBPL2|PPP1R3D|PRELID3B|PSMA7|RPS21|SS18L1|TAF4|TCFL5|UCKL1|YTHDF1	42	6.81407430325e-06	AP2S1|ARHGAP35|ATP6V0A1|BAX|CD3EAP|CNOT3|DMPK|EIF3K|EPN1|FUT1|GRWD1|IRF3|ITGA3|KDELR1|LIG1|MRPS12|NAPA|NFKBIB|NOSIP|NR1H2|NUCB1|NUP62|OPA3|PAF1|PAK4|PDK2|PRKD2|PRMT1|PSMD8|RPL18|RPS9|RUVBL2|SARS2|SLC1A5|SNRNP70|SNRPD2|STRN4|TLN1|TSEN34|U2AF2|ZNF444|ZNF580
CAIRO_HEPATOBLASTOMA_CLASSES_UP	0		8.91935725033e-06	18	1.78386862341e-05	AHCY|AURKA|CPNE1|CSE1L|CSNK2A1|DDX27|EIF2S2|ERGIC3|IMP4|MAPRE1|NOP56|OSBPL2|PSMF1|PTPRA|RPN2|RPS21|SNRPB|SNX5	88	2.8266552223e-11	AAMP|AARS|APRT|BSG|CCNE1|CCNF|CENPN|CEP57|CHEK1|CIAPIN1|CKAP5|CLNS1A|CPSF6|CRAMP1|DAZAP1|DDX10|DDX39A|DMAC2|DNMT1|EIF3F|EIF3M|EIF4E2|FAM216A|FANCA|FARSA|FBL|GINS2|GTF2F1|HMGA1|HOMER1|ILF3|IPO7|KARS|KDELR1|KIF22|LIG1|LSM4|LTA4H|MAZ|MCM2|MCM3|MLST8|MRE11|MSH6|MTA1|NAE1|NAT10|NCLN|NIP7|NT5DC2|NUP93|NUP210|P4HB|PLK1|PNKP|POLD1|PRMT1|PRMT3|RBM4|RFWD3|RFXANK|RNASEH2A|RNF126|RPL14|RPL18|RPL18A|RPL28|RPL36|RPL37A|RPS3|RPS9|RPS14P3|RRM1|RSL1D1|RUVBL2|SAE1|SF3B3|SFPQ|SKP2|SMARCA4|SMARCB1|SSRP1|STK25|TLDC1|TRAP1|TRIM28|UBE2S|VARS
Chiche(PMID: 24644022)-2014_M6.2	0		0.000524300865739	7	0.000437662851943	CSNK2A1|DDRGK1|EIF6|IDH3B|MRGBP|SNRPB2|TMEM230	22	0.000610938879536	ARFGAP2|CFDP1|CLEC16A|COX4I1|FAM32A|FAM96B|KLHL36|MED29|MRPL17|NDUFA11|NDUFB7|NDUFB10|NDUFS7|NUP62|POLR2G|PRKCSH|PSMD8|SF3B2|SPHK2|SRPRA|TMEM258|U2AF2
GRADE_COLON_CANCER_UP	1	BOLA2	2.74191566896e-05	20	5.48383133792e-05	ADNP|ASCL2|CPNE1|CRLS1|DDX27|DPM1|EIF6|ERGIC3|NCOA6|NOP56|NSFL1C|PSMA7|RAB22A|RALY|SNRPB|STAU1|STX16|TMEM230|UBXN4|ZNF343	138	4.24658301936e-22	AAMP|ADAM15|ADAT3|ALG3|AP1M1|API5|ARHGDIA|ASNA1|BANF1|BCL2L12|BCL7C|BORCS8|BRMS1|C19ORF53|CALR|CARM1|CBX2|CBX5|CCNO|CDV3|CLPB|COX6B1|CPSF6|CREBBP|CTTN|DAZAP1|DCTN1|DDX19A|DDX39A|DMAC2|ECSIT|EEF1G|EEF2|EEF2KMT|EEFSEC|EIF3G|EIF3K|EIF4E2|ELOB|EXOSC6|FAM27C|FAM216A|FANCA|FBL|FBRS|FKBP2|FKBP8|FXYD5|GADD45GIP1|GLB1L2|GPRC5C|GPX4|GSTP1|HIST1H4A|HMGA1|HNRNPD|HNRNPM|HOMER1|HOOK2|HSD17B12|HSPBP1|ILF3|IQCK|KHSRP|LAD1|LSR|MCM3|METTL26|MPG|MRPL4|NDUFA7|NDUFV1|NFRKB|NMRAL1|NOB1|NUCB1|PDCD2L|PITPNM1|PITX1|PKN1|PLPP2|POLD1|POLR2I|PPDPF|PPP2R1A|PPP4C|PRDX2|PRKCSH|PSMA1|PSMC4|PSMD8|PTBP1|PTMA|RAD23A|RPL14|RPL18|RPL18A|RPL36|RPL37A|RPL38|RPS3|RPS5|RPS9|RPS11|RPUSD1|S100A11|SAMD1|SEC61A1|SF3A2|SGTA|SH3GL1|SLC29A2|SNRPD2|STARD10|STAT6|TAGLN2|TALDO1|TCF3|TECR|THOP1|TMEM259|TNFRSF12A|TOMM40|TRAP1|TRIM28|TRIR|TRMT112|TTYH3|TUFM|U2AF2|UBE2S|VEGFB|WDR74|WDR83OS|YAP1|ZNF598|ZNF771|ZYX
GSE13411_NAIVE_VS_MEMORY_BCELL_DN	0		0.000318456019609	8	0.000624560924182	AAR2|CEP250|CPNE1|ELMO2|PSMF1|RBCK1|VAPB|ZNF343	32	1.2351115036e-05	ABCC1|AIP|AP2S1|ARL2|ASNA1|ATG2A|ATP6V0D1|BDH1|CCNO|CRCT1|EDC3|EHBP1L1|EIF3G|GPI|HAGH|LDHB|MBTPS1|MLST8|MRPL48|MRPS34|MSRB1|NAP1L4|NCAPD3|NME3|PHKB|POLR2E|RPS14P3|SELENOW|SRPRA|TERF2|UBE2M|UQCR11
GSE19888_CTRL_VS_A3R_INHIBITOR_TREATED_MAST_CELL_UP	0		0.000812684762509	8	0.000668014624328	COMMD7|CSE1L|DYNLRB1|EIF2S2|ITPA|MGME1|ROMO1|SNRPB	27	0.000957354900689	AARS|BCAT2|C16ORF91|C21ORF58|CCNF|CHID1|COMTD1|COQ9|DHPS|DLAT|DPAGT1|E2F7|EME1|HCFC1|HIST1H3F|HMBS|HMOX2|HNRNPD|LSM4|MCM2|MRPL16|MRPL34|PLK1|POLA2|SNRPA|TCF19|TMEM214
Human Breast_Dairkee04_479genes (15260889-TableS2a)	0		1.47150829915e-06	15	2.92727832363e-06	AHCY|AURKA|CPNE1|CSTF1|CTNNBL1|GSS|IDH3B|MANBAL|MAPRE1|MRGBP|OSER1|RAE1|RALY|RNF114|VAPB	58	1.57382746786e-08	ACD|AIP|ALG3|APRT|CCNF|CDCA5|CEP57|CHEK1|CHTF18|DDX10|DDX28|DLAT|E2F4|EDC4|EMC8|ETFB|FEN1|H2AFX|HS6ST2|KIFC1|LMNB2|MCCC1|MCM3|MED16|MLST8|MPHOSPH6|MRE11|MRPL11|MRPL16|MRPL48|NCAPD3|NDE1|NDUFV1|NTHL1|PHKG2|PKMYT1|PLK1|POLD1|PRDX2|PSMC4|RMI2|RPS5|RRM1|SAC3D1|SF1|SLC1A5|SLC29A2|SNRPA|SSRP1|TCOF1|THAP11|TIMM50|TOMM40|TRAP1|UBE2S|UHRF1|UTP4|ZNHIT2
Human Breast_Dairkee04_681genes (15260889-SuppTable2)	0		0.000194004348206	15	0.000135157855679	AHCY|AURKA|CPNE1|CSTF1|CTNNBL1|GSS|IDH3B|MANBAL|MAPRE1|MRGBP|OSER1|RAE1|RALY|RNF114|VAPB	59	0.000252850840733	ACD|AIP|ALG3|APRT|CCNF|CDCA5|CEP57|CHEK1|CHTF18|DDX10|DDX28|DLAT|E2F4|EDC4|EMC8|ETFB|FEN1|FUBP1|H2AFX|HS6ST2|KIFC1|LMNB2|MCCC1|MCM3|MED16|MLST8|MPHOSPH6|MRE11|MRPL11|MRPL16|MRPL48|NCAPD3|NDE1|NDUFV1|NTHL1|PHKG2|PKMYT1|PLK1|POLD1|PRDX2|PSMC4|RMI2|RPS5|RRM1|SAC3D1|SF1|SLC1A5|SLC29A2|SNRPA|SSRP1|TCOF1|THAP11|TIMM50|TOMM40|TRAP1|UBE2S|UHRF1|UTP4|ZNHIT2
Human Viral_Cairo08_982genes (19061838-TableS7)	0		0.000128914838117	19	0.000254777660155	AHCY|AURKA|BLCAP|CPNE1|CSE1L|CSNK2A1|DDX27|EIF2S2|ERGIC3|IMP4|MAPRE1|NOP56|OSBPL2|PSMF1|PTPRA|RPN2|RPS21|SNRPB|SNX5	92	3.05201607856e-06	AAMP|AARS|ALDH2|APRT|ATN1|BSCL2|BSG|CCNE1|CCNF|CENPN|CEP57|CHEK1|CIAPIN1|CKAP5|CLNS1A|CPSF6|CRAMP1|DAZAP1|DDX10|DDX39A|DMAC2|DNMT1|EIF3F|EIF3M|EIF4E2|FAM216A|FANCA|FARSA|FBL|GAS6|GINS2|GTF2F1|HMGA1|HOMER1|ILF3|IPO7|KARS|KDELR1|KIF22|LIG1|LSM4|LTA4H|MAZ|MCM2|MCM3|MLST8|MRE11|MSH6|MTA1|NAE1|NAT10|NCLN|NIP7|NT5DC2|NUP93|NUP210|P4HB|PLK1|PLXNB2|PNKP|POLD1|PRMT1|PRMT3|RBM4|RFWD3|RFXANK|RNASEH2A|RNF126|RPL14|RPL18|RPL18A|RPL28|RPL36|RPL37A|RPS3|RPS9|RRAS|RRM1|RSL1D1|RUVBL2|SAE1|SF3B3|SFPQ|SKP2|SMARCA4|SMARCB1|SSRP1|STK25|TLDC1|TRAP1|TRIM28|VARS
PUJANA_BRCA2_PCC_NETWORK	0		0.000176073045633	16	3.0616519046e-06	AURKA|CSNK2A1|CSTF1|IDH3B|MAPRE1|NINL|PFDN4|RAE1|RALY|RBCK1|SNRPB|SYCP2|TAF4|TOP1|TTI1|UCKL1	50	0.000349084439362	ABCC1|ATN1|BAX|CCND3|CCNF|CEP57|CFAP20|CHEK1|CKAP5|CNOT3|CPSF6|CTCF|DDX39A|DNMT1|DNTT|FANCA|FEN1|FUBP1|H2AFX|HCFC1|HIRIP3|HNRNPUL1|ILF3|KIF22|KIFC1|LIG1|LSM4|MAZ|MCM2|MCM3|MPHOSPH6|MRE11|NAE1|NFATC3|NUP93|POLD1|POLE|POLR2G|RNASEH2A|RRM1|SAC3D1|SKP2|SMARCA4|SNRPA|SSRP1|TCF3|TMEM186|TRIM28|UBE2I|UBE2S
PUJANA_CHEK2_PCC_NETWORK	1	BOLA2	6.49629877357e-05	19	4.59538710318e-05	ADNP|AURKA|CSE1L|CSNK2A1|DPM1|EIF2S2|IDH3B|KRAS|NOP56|PFDN4|RBCK1|RPS21|SNRPB|SNRPB2|TAF4|TOP1|TTI1|YWHAB|ZNF337	82	8.39721044396e-05	ABCC10|AFF2|CCNF|CDV3|CEP57|CFAP20|CHEK1|CHERP|CLP1|CNOT1|CNOT3|CPSF6|CPT1A|CTCF|DDX10|DDX39A|DLAT|DNMT1|EED|EIF3M|EWSR1|FAM216A|FBL|FEN1|FUBP1|GSPT1|HNRNPM|ILF3|KARS|KHSRP|KIFC1|LDHB|LIG1|LMNB2|LSM4|LSM7|MCM2|MCM3|MPHOSPH6|MRE11|MSH6|MTA1|NAE1|NAP1L4|NUP62|NUP160|NUP210|PAFAH1B3|PGAP2|PLK1|POLE|POLR2G|POP4|PPP2R1B|PRMT1|PRMT3|PRPF19|PSMA1|PTMA|RBM14|RNASEH2A|RNF126|RRM1|RRP7A|SFPQ|SKP2|SLC1A4|SLC7A5|SMARCA4|SMARCB1|SMARCD1|SMG7|SNRPA|SNRPD2|SSRP1|TCF3|THAP12|THOP1|TOMM40|UBE2I|UBE2S|WEE1
Spliceosome	0		0.000126583056526	7	0.000179416904952	AAR2|CRNKL1|CTNNBL1|DHX35|RALY|SNRPB|SNRPB2	22	7.37492080992e-05	CACTIN|CWC15|DHX38|HNRNPM|HNRNPU|LSM4|LSM7|PRPF19|PRPF31|SART1|SF1|SF3A2|SF3B2|SF3B3|SF3B4|SNRNP25|SNRPA|SNRPD2|SUGP1|U2AF2|WDR83|XAB2
